All bands on the blot, including the molecular weight ladder, are difficult to see or completely absent, indicating a systemic technical problem rather than target-specific detection failure.
Common Causes
1Ineffective protein transfer due to incorrect transfer direction or improper PVDF membrane preparation (not pre-soaked in methanol then transfer buffer)
2Excessive washing between steps removing detection reagents
3Bacterial contamination in wash or incubation buffers from airborne spores or fibers
4Reagent loss of activity from improper storage, excessive freeze-thaw cycles, or fluorophore light damage
5Wrong filter settings for detection wavelengths or insufficient exposure time during imaging
Solutions
1Verify successful transfer using reversible stain (Ponceau S) before immunostaining; ensure SDS-negative charged proteins transfer toward positive electrode
2Reduce washing duration or number of steps to retain detection reagents
3Use fresh sterile buffer (e.g., sterile PBS) for all steps
4Store fluorophores and conjugated antibodies in dark (wrap in foil); avoid excessive freeze-thaw cycles
5Set correct wavelength filters on instrument; optimize exposure time with longer durations