Western blot shows weak or no signal for target protein. Loading controls may also appear faint, indicating insufficient total protein loaded per lane. This is particularly problematic for low-abundance target proteins.
Common Causes
1Total protein loaded per lane below detection threshold (typically <5 µg)
2Target protein expression level too low relative to sample amount
3Protein degradation during sample preparation reducing available target
4Inaccurate protein quantification leading to underloading
Solutions
1Increase protein loading amount (typically 10-50 µg total protein per lane, optimize for target)
2Concentrate samples using ultrafiltration or precipitation methods before loading
3Re-quantify protein concentration using Bradford, BCA, or Lowry assay
4Add protease inhibitors to lysis buffer and keep samples on ice during preparation
5For low-abundance proteins, load maximum amount compatible with gel resolution (up to 100 µg)