Home › Failure Case Library › Crystal violet stain is too light — colonies hard to see
Colony Formation Assay minor

Crystal violet stain is too light — colonies hard to see

Symptom
Stained dish shows only very faint purple; colonies are hard to distinguish from background.
Common Causes
  1. 1 Staining time was too short
  2. 2 Crystal violet stock was too dilute or expired
  3. 3 Washing was too aggressive and removed stain
Solutions
  1. 1 Extend staining time (20 – 30 min in 0.1 % crystal violet)
  2. 2 Use freshly prepared 0.1 % crystal violet
  3. 3 Wash gently with tap water 2 – 3 times only
Related Video (3)
Bilibili (China-Accessible Mirrors) ★ 88
Colony Formation Assay — Step-by-Step Protocol (Bio-Techne)
"Directly covers crystal violet staining step in the colony formation assay, making it ideal for troubleshooting a too-light stain."
YouTube (Curated Tutorials) ★ 78
A Guide to the Colony Forming Cell Assay: Methods and Tips
"Step-by-step CFC assay protocol with optimization tips likely addresses staining time and colony visualization."
YouTube (Curated Tutorials) ★ 70
Clonogenic Assay
"Provides a standard full clonogenic assay protocol including fixation and staining steps relevant to the failure."
Source: xiaohongshu.com ↗
← Back to all cases