Home Failure Case Library Crystal violet stain is too light — colonies hard to see
Colony Formation Assay minor

Crystal violet stain is too light — colonies hard to see

Symptom
Stained dish shows only very faint purple; colonies are hard to distinguish from background.
Common Causes
  1. 1 Staining time was too short
  2. 2 Crystal violet stock was too dilute or expired
  3. 3 Washing was too aggressive and removed stain
Solutions
  1. 1 Extend staining time (20 – 30 min in 0.1 % crystal violet)
  2. 2 Use freshly prepared 0.1 % crystal violet
  3. 3 Wash gently with tap water 2 – 3 times only
Related Video (3)
Bilibili (China-Accessible Mirrors) ★ 95
Colony Formation Assay — Step-by-Step Protocol (Bio-Techne)
"Explicitly covers crystal violet staining step of colony formation assay, directly addressing the staining procedure where the failure occurs."
YouTube (Curated Tutorials) ★ 78
A Guide to the Colony Forming Cell Assay: Methods and Tips
"Comprehensive protocol with optimization tips throughout, likely includes staining duration guidance to prevent faint coloring."
YouTube (Curated Tutorials) ★ 72
Clonogenic Cell Survival Assay (Colony Formation Assay)
"Detailed clonogenic assay protocol covering the complete procedure including staining, useful for understanding proper technique execution."
Source: xiaohongshu.com ↗
← Back to all cases