Home›Molecular Biology›A Simple Method for Quantifying Blastema Growth in Regenerating Planarians: measure blastema area
Steps
1Prepare and convert image to 8-bit--:--
2Enhance contrast and select blastema region00:35
3Apply threshold to isolate blastema01:13
4Configure measurements and analyze particles02:00
5Identify and record blastema area measurement02:32
6Save analysis images and results03:06
Molecular BiologyCurrent Protocols
A Simple Method for Quantifying Blastema Growth in Regenerating Planarians: measure blastema area
Protocol
Difficulty
intermediate
Steps
1
Prepare and convert image to 8-bit
Open the planarian image in ImageJ and reset scaling using the scale image from that day. Convert the image from RGB to 8-bit grayscale to create a black and white image suitable for analysis.
▶ --:--
2
Enhance contrast and select blastema region
Apply contrast enhancement with a value of 0.15 to increase the distinction between the worm and background. Use the rectangle tool to carefully draw a region of interest around the blastema, ensuring complete coverage while minimizing background inclusion.
▶ 00:35
3
Apply threshold to isolate blastema
Duplicate the selected image region and apply threshold adjustment to the duplicate. Adjust the threshold slider so the blastema appears in red/color while the background turns black, maximizing blastema visibility.
▶ 01:13
4
Configure measurements and analyze particles
Set measurement parameters to track only area. Use Analyze Particles with size range 0 to Infinity, enabling options for outlines display, results, hole inclusion, and overlay visualization.
▶ 02:00
5
Identify and record blastema area measurement
Locate the blastema in the outlines image (labeled as particle number 4) and identify its area value (0.052 in this example) from the results table. Record this measurement in the workbook template.
▶ 02:32
6
Save analysis images and results
Save both the outline and thresholded images to a designated results folder for future reference and documentation. Label files clearly with the specimen identifier (e.g., Title Nine outline, Title Nine threshold).
▶ 03:06
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