Home Genetics / Genomics Alu PV92 Detection by PCR
Steps
  1. 1 Collect cheek cells with saline rinse 00:21
  2. 2 Centrifuge mouth rinse to pellet cells 00:46
  3. 3 Resuspend cell pellet 01:44
  4. 4 Transfer cells to lysis matrix 02:08
  5. 5 Incubate at 56°C then 95°C 02:44
  6. 6 Centrifuge DNA extract and store 03:24
  7. 7 Set up PCR reactions with template 04:04
Genetics / Genomics Bio-Rad Laboratories

Alu PV92 Detection by PCR

Protocol
Difficulty
intermediate

Steps

1
Collect cheek cells with saline rinse

Sip 10 mL of 0.9% saline solution and rinse your mouth vigorously for 30 seconds while gently chewing the inside of your cheek to release cells. Expel the saline back into the cup or tube.

▶ 00:21
2
Centrifuge mouth rinse to pellet cells

Pipette 1 mL of mouth rinse into a 1.5 mL microcentrifuge tube, place in balanced configuration, and centrifuge at maximum speed for 2 minutes (or 5 minutes at 2,000 G). Locate the white cell pellet approximately the size of a match head; repeat if pellet is too small.

▶ 00:46
3
Resuspend cell pellet

Pour off the saline solution carefully without losing the pellet, leaving a small amount at the bottom. Resuspend the pellet by rubbing the tube over a tube rack, vortexing, or flicking to break up all clumps.

▶ 01:44
4
Transfer cells to lysis matrix

Using a micropipette set to 20 microliters with aerosol barrier tips, transfer all resuspended cells to a screw cap tube containing InstaGene Matrix. Multiple transfers may be required; screw the cap on tightly and vortex the tubes.

▶ 02:08
5
Incubate at 56°C then 95°C

Incubate the screw cap tubes at 56°C for 10 minutes, vortexing or shaking at the 5-minute mark. Remove and vortex the tubes, then incubate at 95°C for 5 minutes to inactivate the lysis buffer.

▶ 02:44
6
Centrifuge DNA extract and store

Vortex the tubes and centrifuge at top speed for 5 minutes (or 10 minutes at 2,000 G) to pellet debris. The DNA template is now ready for PCR or can be stored at 4°C for up to one month.

▶ 03:24
7
Set up PCR reactions with template

Pipette 20 microliters of PCR Master Mix into each labeled PCR tube, then add 20 microliters of DNA template from the corresponding labeled sample, avoiding the InstaGene Matrix pellet at the bottom. Pipette up and down to thoroughly mix.

▶ 04:04

🚨 Failure Case Library (3) + Submit your own case

severe
No Band Due to Template or Reagent Quality Issues
PCR fails to produce visible band despite correct concentrations and cycling parameters. Template degradation, contamination, or impure reagents may be inhibiting the reaction.
💡 5 · ✓ 5
severe
PCR Inhibition from Contaminated Template
No or weak PCR amplification despite correct reaction setup, with template DNA containing residual contaminants from extraction or purification that inhibit polymerase activity.
💡 4 · ✓ 6
moderate
No Band or Faint Band Due to Template Quality Problems
PCR fails or produces weak products despite correct reagent concentrations and cycling parameters, due to compromised template DNA quality or presence of inhibitors.
💡 4 · ✓ 4
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