Home Biochemistry Import of ÄKTA chromatograms for purity analysis
Steps
  1. 1 Export chromatogram from ÄKTA system 00:05
  2. 2 Prepare SDS-PAGE gel with fractions 00:35
  3. 3 Image gel on trans-illuminator 01:00
  4. 4 Analyze gel image with software 01:20
  5. 5 Import chromatogram into analysis software 01:37
  6. 6 Generate combined purity report 01:57
Biochemistry Cytiva

Import of ÄKTA chromatograms for purity analysis

Protocol
Difficulty
intermediate

Steps

1
Export chromatogram from ÄKTA system

View the purified protein chromatogram on the ÄKTA system and export it as an RC file for downstream analysis.

▶ 00:05
2
Prepare SDS-PAGE gel with fractions

After completing the ÄKTA run, prepare an SDS-PAGE gel using the collected fractions. Stain the gel using the commercial staining standard (Novagen) for band visualization.

▶ 00:35
3
Image gel on trans-illuminator

Visualize the stained SDS-PAGE gel using a calibrated trans-illuminator with a light source that measures optical density (OD) units, the industrial standard for quantifying visible protein stains.

▶ 01:00
4
Analyze gel image with software

Import the gel image into quantitation software and define lanes, background, and bands. Compare profiles across different lanes and runs by overlapping the data.

▶ 01:20
5
Import chromatogram into analysis software

Import the exported ÄKTA chromatogram file into the quantitation software to link the chromatogram peaks with the SDS-PAGE gel analysis results.

▶ 01:37
6
Generate combined purity report

Export a combined report that integrates both the chromatogram from the ÄKTA run and the SDS-PAGE gel analysis data for comprehensive purity documentation.

▶ 01:57

🚨 Failure Case Library (2) + Submit your own case

severe
Incomplete lysis — visible debris or turbid supernatant
After homogenization / lysis there are visible chunks or debris in the tube and the supernatant is turbid; SDS-PAGE shows missing or weak bands.
💡 5 · ✓ 5
moderate
Viscous sample — stringy lysate, hard to pipette
Lysate is stringy/sticky, pipettes slowly, sticks to the tip, and gives unreliable BCA quantification and bad SDS-PAGE loading.
💡 4 · ✓ 4
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