Home›Microbiology›Estimating Virus Production Rates in Aquatic Systems
MicrobiologyJoVE (Open Access)Citable · DOI
Estimating Virus Production Rates in Aquatic Systems
DOI: 10.3791/2196-v
What you'll learn
✓Apply ultrafiltration techniques to generate virus-free water samples
✓Estimate viral production rates using reduction and reoccurrence methodology
✓Quantify virus-mediated microbial mortality in aquatic environments
✓Perform viral enumeration by fluorescence microscopy
Protocol
The turnover rate of viruses in marine and freshwater systems can be estimated by a reduction and reoccurrence technique. The data allow researchers to infer rates of virus-mediated microbial mortality in aquatic systems.
Difficulty
advanced
Total time
~3–5 days per sample set (including incubation periods)
Biosafety
BSL-1
Steps
1
Understand viral turnover in aquatic systems
Review the principles of virus-mediated microbial mortality and how reduction-reoccurrence techniques estimate viral production rates in marine and freshwater environments.
▶ 00:09
2
Ultrafiltrate seawater to generate virus-free water
Apply ultrafiltration methods to remove viral particles from seawater, creating a virus-free baseline for subsequent viral production assays.
▶ 01:45
3
Perform virus reduction method for production
Execute the reduction phase of the technique by depleting viral populations in the sample, then monitor their reoccurrence to calculate production rates.
▶ 03:23
4
Measure virus production under in situ conditions
Incubate samples under natural environmental conditions to obtain ecologically relevant viral production estimates.
▶ 05:40
5
Enumerate viruses by fluorescence microscopy
Apply microscopy protocols to quantify viral particles at each timepoint, generating data for production rate calculations.
▶ 06:48
6
Interpret and present representative viral production data
Analyze results to extract viral turnover rates and discuss implications for microbial mortality in the studied aquatic system.
▶ 09:35
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