Home Cell Biology Monarch DNA Gel Extraction Kit Protocol
Steps
  1. 1 Prepare DNA Wash Buffer with ethanol 00:09
  2. 2 Excise DNA fragment from agarose gel 00:26
  3. 3 Dissolve agarose gel slice 00:49
  4. 4 Bind DNA to column matrix 01:28
  5. 5 Wash DNA column twice 01:45
  6. 6 Elute extracted DNA from column 02:08
  7. 7 Collect purified gel-extracted DNA 02:26
Cell Biology New England Biolabs

Monarch DNA Gel Extraction Kit Protocol

Protocol
Difficulty
intermediate

Steps

1
Prepare DNA Wash Buffer with ethanol

Add 4 volumes of ethanol to one volume of DNA Wash Buffer according to kit size. For a 50-prep kit, add 20 ml ethanol to 5 ml buffer; for a 250-prep kit, add 100 ml ethanol to 25 ml buffer.

▶ 00:09
2
Excise DNA fragment from agarose gel

Visualize the DNA fragment under UV light and excise it from the gel using a razor blade or scalpel, cutting as close to the DNA as possible to minimize excess agarose and UV exposure.

▶ 00:26
3
Dissolve agarose gel slice

Transfer the excised band to a 1.5 ml microcentrifuge tube, weigh it, and add 4 volumes of Monarch Gel Dissolving Buffer. Incubate at 37-55°C for 5-10 minutes, mixing periodically until the agarose completely dissolves.

▶ 00:49
4
Bind DNA to column matrix

Load the dissolved sample onto the column and close the cap. Centrifuge at 16,000 x g for 1 minute and discard the flow-through; DNA is now bound to the column.

▶ 01:28
5
Wash DNA column twice

Re-insert the column into a collection tube and add 200 μl of DNA Wash Buffer. Centrifuge for 1 minute and discard flow-through. Repeat the wash step with another 200 μl of DNA Wash Buffer and centrifuge again.

▶ 01:45
6
Elute extracted DNA from column

Transfer the column to a clean microfuge tube ensuring the column tip does not contact the flow-through. Add 6 or more μl of DNA Elution Buffer to the column membrane center and incubate for 1 minute to maximize yield.

▶ 02:08
7
Collect purified gel-extracted DNA

Centrifuge the column for 1 minute at 16,000 x g and collect the flow-through in the tube below, which contains your final gel-extracted DNA.

▶ 02:26

🚨 Failure Case Library (1) + Submit your own case

moderate
Eluted DNA Difficult to Dissolve or Resuspend
DNA pellet or eluate shows poor solubility with visible aggregates or turbidity. DNA remains undissolved after standard elution protocol, requiring extended incubation.
💡 5 · ✓ 6
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