Home Analytical Chem Mass Spectrometry
Steps
  1. 1 Understand mass spectrometry instrumentation and principles 00:02
  2. 2 Analyze fragmentation from C1-C2 bond cleavage 01:47
  3. 3 Identify parent peak and base peak characteristics 03:28
  4. 4 Compare fragmentation stability between bond cleavages 05:03
  5. 5 Assign all major peaks to corresponding fragments 07:07
  6. 6 Explain secondary fragmentation and allylic stabilization 07:57
  7. 7 Demonstrate hydride shift rearrangement mechanism 09:05
Analytical Chem YouTube (Curated Tutorials)

Mass Spectrometry

Protocol
Difficulty
intermediate

Steps

1
Understand mass spectrometry instrumentation and principles

Learn how mass spectrometry works by vaporizing a sample, ionizing it with an electron beam, and detecting positively charged ions. Understand that the mass spectrum displays relative abundance of fragments on the y-axis and mass-to-charge ratio on the x-axis.

▶ 00:02
2
Analyze fragmentation from C1-C2 bond cleavage

Break the C1-C2 bond of pentane to form a methyl cation (m/z = 15) and a butyl cation (m/z = 57). Calculate atomic weights using carbon = 12 and hydrogen = 1 to determine fragment masses.

▶ 01:47
3
Identify parent peak and base peak characteristics

Identify the parent peak (M+ at m/z = 72) as the intact pentane molecule and recognize the base peak at m/z = 43 as the propyl cation with 100% relative abundance. All other peaks are compared to this reference.

▶ 03:28
4
Compare fragmentation stability between bond cleavages

Compare C1-C2 bond cleavage producing a methyl cation (unstable) with C2-C3 bond cleavage producing ethyl and propyl cations (more stable primary carbocations). Explain why the C2-C3 cleavage is more abundant due to greater carbocation stability.

▶ 05:03
5
Assign all major peaks to corresponding fragments

Summarize peak assignments: m/z = 15 (methyl cation), m/z = 29 (ethyl cation), m/z = 43 (propyl cation), m/z = 57 (butyl cation), and m/z = 72 (parent ion). These represent the main fragmentation products of pentane.

▶ 07:07
6
Explain secondary fragmentation and allylic stabilization

Show how the propyl cation (m/z = 43) can lose two hydrogen radicals to form an allylic carbocation (m/z = 41) stabilized by resonance. This rearrangement explains the abundance of the m/z = 41 peak.

▶ 07:57
7
Demonstrate hydride shift rearrangement mechanism

Show how a hydride shift can convert the primary propyl cation into a more stable secondary carbocation, both retaining the same m/z = 43 ratio. This explains why multiple structural arrangements produce the same mass peak.

▶ 09:05
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