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Tissue Imaging (Autofluorescence) severe

Red Blood Cell and Heme-Related Autofluorescence

Symptom
Strong autofluorescence across multiple channels in blood-rich tissues such as spleen, liver, brain, bone marrow, and vascularized tumors. Heme and porphyrins dominate signal especially when tissue is not thoroughly perfused.
Common Causes
  1. 1 Residual red blood cells containing heme and porphyrins
  2. 2 Insufficient perfusion prior to fixation
  3. 3 High tissue vascularity
  4. 4 Blood clotting during perfusion
Solutions
  1. 1 Perfuse with PBS prior to fixation when possible
  2. 2 Include approximately 10 U/mL heparin in perfusion solution to reduce clotting
  3. 3 For human/postmortem or non-perfused tissues, wash sections longer
  4. 4 Consider pigment quenchers such as Sudan Black B or cupric sulfate
  5. 5 Assign low-abundance targets to far-red channels where RBC background is lower
Related Video (3)
Current Protocols ★ 82
Deciding on an Approach for Mitigating Autofluorescence
"Directly addresses strategies for mitigating autofluorescence, the core problem in this failure case."
Current Protocols ★ 78
Heterogeneous Autofluorescence
"Explains heterogeneous autofluorescence sources and behavior, matching the RBC/heme autofluorescence symptom."
Bilibili (China-Accessible Mirrors) ★ 60
Immunofluorescence IF Protocol and Confocal Imaging
"Demonstrates the full immunofluorescence and confocal imaging workflow where such autofluorescence artifacts are encountered and need troubleshooting."
Source: abcam.com ↗
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