Home Failure Case Library Red Blood Cell and Heme-Related Autofluorescence
Tissue Imaging (Autofluorescence) severe

Red Blood Cell and Heme-Related Autofluorescence

Symptom
Strong autofluorescence across multiple channels in blood-rich tissues such as spleen, liver, brain, bone marrow, and vascularized tumors. Heme and porphyrins dominate signal especially when tissue is not thoroughly perfused.
Common Causes
  1. 1 Residual red blood cells containing heme and porphyrins
  2. 2 Insufficient perfusion prior to fixation
  3. 3 High tissue vascularity
  4. 4 Blood clotting during perfusion
Solutions
  1. 1 Perfuse with PBS prior to fixation when possible
  2. 2 Include approximately 10 U/mL heparin in perfusion solution to reduce clotting
  3. 3 For human/postmortem or non-perfused tissues, wash sections longer
  4. 4 Consider pigment quenchers such as Sudan Black B or cupric sulfate
  5. 5 Assign low-abundance targets to far-red channels where RBC background is lower
Related Video (2)
Current Protocols ★ 85
Deciding on an Approach for Mitigating Autofluorescence
"Directly addresses autofluorescence mitigation strategies, the core problem in this failure case"
JoVE (Open Access) ★ 72
Measuring Interactions between Fluorescent Probes and Lignin in Plant Sections by sFLIM Based on Native Autofluorescence
"Demonstrates tissue imaging with native autofluorescence measurement and interference management in complex biological samples"
Source: abcam.com ↗
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