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PCR (Sigma Guide) severe

PCR ReadyMix Works for PCR but Fails in qPCR

Symptom
ReadyMix produces amplification in standard PCR but completely fails in real-time qPCR applications; equivalent products from other suppliers work well
Common Causes
  1. 1 REDTaq ReadyMix was used for real-time qPCR (red dye interferes with fluorescence detection)
  2. 2 ReadyMix without reference dye was used on instrument requiring reference dye or incorrect concentration was included
  3. 3 ReadyMix designed for use with probes was used without including a probe in the reaction
Solutions
  1. 1 Use appropriate ReadyMixes for the desired PCR application
  2. 2 Ensure red dye products are not used for qPCR as they interfere with fluorescence detection in most qPCR instruments
  3. 3 Verify ReadyMix choice matches instrument requirements and application type
Related Video (2)
Thermo Fisher Scientific ★ 85
How to Optimize qPCR using SYBR Green Assays - Ask TaqMan #38
"Explains optimizing qPCR with fluorescent dye assays, directly relevant to understanding how the red dye in ReadyMix interferes with fluorescence detection."
Bilibili (China-Accessible Mirrors) ★ 75
Bio-Rad qPCR Instrument Operation Protocol
"Shows real qPCR instrument operation and plate setup, illustrating the equipment context where the fluorescence detection failure would occur."
Source: sigmaaldrich.com ↗
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