Failure Case Library

Real lab failures, root causes, and fixes — curated and bilingually annotated by our team.

All Techniques (10) PCR (Sigma Guide) (12) End-point PCR Primers (9) Western Blot (9) Wound Healing Assay (5) Cell Culture (Contamination) (7) Lipid Transfection (8) CCK-8 Cell Viability Assay (5) Colony Formation Assay (10) Transfection (8) Nucleic Acid Quantification (9) Transfection (Co-transfection) (1) Protein Extraction (4) Plasmid Construction (Double Digest) (1) Sanger Sequencing (2) Plasmid Construction (1) qPCR (RT-qPCR) (5) Transwell Migration / Invasion Assay (5) Immunohistochemistry (IHC) (6) PCR (Polymerase Chain Reaction) (26) Restriction Enzyme Digest (13) DNA Cleanup & Plasmid Purification (7) RNA Cleanup (4) NGS Library Preparation (NEBNext Ultra II) (7) HMW DNA Extraction (Monarch) (7) LAMP (Loop-mediated Isothermal Amplification) (7) RNA Depletion for RNA-seq (7) Bacterial rRNA Depletion (4) Cell-free DNA Extraction (8) ELISA (Competitive) (18) ELISA (Signal Problems) (11) ELISA (High Background) (8) ELISA (Inconsistent Results / High CV) (6) ELISA (Standard Curve Fit Problems) (6) Western Blot (Weak / No Signal) (6) Western Blot (Detection Problems) (7) Western Blot (Bands at Wrong MW) (5) Western Blot (Misshapen / Uneven Bands) (5) Western Blot (Unexpected Multiple Bands) (7) Western Blot (Unusual Gel Band Appearance) (3) ChIP (High Background) (1) ChIP (Low Resolution with High Background) (6) ChIP (Low Signal) (8) ChIP (PCR Amplification Problems) (4) Immunohistochemistry (High Background) (9) Immunohistochemistry (No Staining) (9) Immunoprecipitation (High Antibody Elution) (1) Immunoprecipitation (High Background) (8) Immunoprecipitation (No Protein Detected) (5) Immunoprecipitation (Protein Obstruction) (1) ELISPOT (8) Tissue Imaging (Autofluorescence) (9) Flow Cytometry (Troubleshooting) (8) ELISA Development (9) Flow Cytometry (Autofluorescence) (7) Flow Cytometry (Compensation) (7) Flow Cytometry (Fc Blocking) (7) Flow Cytometry (Fixation & Permeabilization) (9) Flow Cytometry (Isotype Controls) (7) Flow Cytometry (Fixation Buffers) (7) Western Blot (CST Guide) (8) ChIP (CST Guide) (8) Immunoprecipitation (CST Guide) (14) Immunohistochemistry (CST Guide) (14) Flow Cytometry (CST Guide) (8) ELISA (R&D Guide) (10) ELISA (Sigma Guide) (6) Western Blot Immunodetection (19) IP-Western Blot (6) Flow Cytometry (Sample Considerations) (14) Flow Cytometry (Paraformaldehyde Fixation) (14) Western Blot (Sigma Protocol) (8) PCR / RT-PCR Amplification Problems (5) Cell Culture (Cell Death) (8) Cell Culture (Precipitates) (6) PCR (Invitrogen Guide) (8) PCR / qPCR Plastics (9) Flow Cytometry (Controls) (8) Plasmid Mini-prep (1) Transfection (siRNA Knockdown) (1) Western Blot (Blue Background) (1)
ELISA (R&D Guide) minor

Green Color Upon Adding Stop Solution (Streptavidin-HRP)

When sulfuric acid stop solution is added to wells after TMB substrate incubation, a green color appears instead of the expected yellow, indicating incomplete mixing and pH gradient in the well.

💡 2 causes ✓ 3 fixes
ELISA (R&D Guide) severe

High Uniform Background Signal

All wells show elevated absorbance including blanks and negative controls, creating a uniformly high background that reduces signal-to-noise ratio and compresses the standard curve.

💡 5 causes ✓ 5 fixes
ELISA (R&D Guide) critical

No Signal or Weak Signal in ELISA

After developing the ELISA plate, wells show no color change or very faint signal that is barely above background, even for positive controls or high-concentration standards.

💡 6 causes ✓ 6 fixes
ELISA (R&D Guide) moderate

High Variability Between Experimental Runs

Standard curves or sample values differ significantly between experiments run on different days, despite using the same reagents and protocol, showing poor reproducibility.

💡 5 causes ✓ 5 fixes
ELISA (R&D Guide) moderate

Edge and Drift Effects on ELISA Plate

Wells at the plate edges show systematically higher or lower absorbance than center wells, or a gradient pattern appears across the plate, affecting data quality especially for samples in edge positions.

💡 5 causes ✓ 5 fixes
ELISA (R&D Guide) minor

Sample Values Above Assay Range (Hook Effect Excluded)

Sample absorbance readings exceed the top standard, reading off the curve, while the standard curve itself appears normal with proper shape and dynamic range.

💡 2 causes ✓ 3 fixes
ELISA (R&D Guide) severe

Poor Dynamic Range Between Signal and Background

The difference between maximum signal (high standards) and background (blank wells) is compressed, typically less than 5-fold, making it difficult to distinguish between samples of different concentrations.

💡 5 causes ✓ 5 fixes
ELISA (R&D Guide) severe

High Variability Between Replicates (CV >15%)

Replicate wells for the same sample or standard show high coefficient of variation (>15%), with inconsistent absorbance values that suggest uneven treatment or technical errors.

💡 5 causes ✓ 5 fixes
ELISA (R&D Guide) critical

No Signal or Weak Signal in ELISA

No detectable signal or very weak signal across all wells, including standard wells. The plate reader shows absorbance values near baseline or significantly lower than expected.

💡 6 causes ✓ 6 fixes
ELISA (R&D Guide) moderate

Biological Sample Not in Detectable Range

Standard curve appears normal, but sample wells show no signal or signal below the lowest standard. This occurs when the analyte concentration in samples is below the assay detection limit.

💡 4 causes ✓ 4 fixes