Failure Case Library

Real lab failures, root causes, and fixes — curated and bilingually annotated by our team.

All Techniques (9) Nucleic Acid Quantification (9) Lipid Transfection (8) End-point PCR Primers (9) Cell Culture (Contamination) (7) PCR (Sigma Guide) (12) Flow Cytometry (Controls) (8) PCR / qPCR Plastics (9) PCR (Invitrogen Guide) (8) Cell Culture (Precipitates) (6) Cell Culture (Cell Death) (8) ELISA (Sigma Guide) (6) PCR / RT-PCR Amplification Problems (5) Flow Cytometry (Paraformaldehyde Fixation) (14) Flow Cytometry (Sample Considerations) (14) ELISA (R&D Guide) (10) Western Blot Immunodetection (19) Flow Cytometry (CST Guide) (8) Immunohistochemistry (CST Guide) (14) Immunoprecipitation (CST Guide) (14) ChIP (CST Guide) (8) ELISA Development (9) Western Blot (Sigma Protocol) (8) IP-Western Blot (6) Western Blot (CST Guide) (8) Flow Cytometry (Fixation Buffers) (7) Flow Cytometry (Isotype Controls) (7) Flow Cytometry (Fixation & Permeabilization) (9) Flow Cytometry (Fc Blocking) (7) Flow Cytometry (Compensation) (7) Flow Cytometry (Autofluorescence) (7) Flow Cytometry (Troubleshooting) (8) Tissue Imaging (Autofluorescence) (9) ELISPOT (8) Immunoprecipitation (Protein Obstruction) (1) Immunoprecipitation (No Protein Detected) (5) Immunoprecipitation (High Background) (8) Immunoprecipitation (High Antibody Elution) (1) Immunohistochemistry (No Staining) (9) Immunohistochemistry (High Background) (9) ChIP (PCR Amplification Problems) (4) ChIP (Low Signal) (8) ChIP (Low Resolution with High Background) (6) ChIP (High Background) (1) Western Blot (Blue Background) (1) Western Blot (Unusual Gel Band Appearance) (3) Western Blot (Unexpected Multiple Bands) (7) Western Blot (Misshapen / Uneven Bands) (5) Western Blot (Bands at Wrong MW) (5) Western Blot (Detection Problems) (7) Western Blot (Weak / No Signal) (6) ELISA (Standard Curve Fit Problems) (6) ELISA (Inconsistent Results / High CV) (6) ELISA (High Background) (8) ELISA (Signal Problems) (11) ELISA (Competitive) (18) Cell-free DNA Extraction (8) Bacterial rRNA Depletion (4) RNA Depletion for RNA-seq (7) LAMP (Loop-mediated Isothermal Amplification) (7) HMW DNA Extraction (Monarch) (7) NGS Library Preparation (NEBNext Ultra II) (7) RNA Cleanup (4) DNA Cleanup & Plasmid Purification (7) PCR (Polymerase Chain Reaction) (26) Restriction Enzyme Digest (13) Western Blot (9) Immunohistochemistry (IHC) (6) Colony Formation Assay (10) Transwell Migration / Invasion Assay (5) qPCR (RT-qPCR) (5) Transfection (8) Plasmid Construction (1) Sanger Sequencing (2) Plasmid Mini-prep (1) Plasmid Construction (Double Digest) (1) Protein Extraction (4) Transfection (Co-transfection) (1) Transfection (siRNA Knockdown) (1) CCK-8 Cell Viability Assay (5) Wound Healing Assay (5)
Western Blot severe

Overexposed / signal saturation

Bands look thick and bloated, edges spill out, strong-signal differences are masked; not suitable for densitometry quantification because the linear range is lost.

💡 3 causes ✓ 4 fixes
Western Blot moderate

White bands / inverted signal (over-detection)

White (hollow) bands appear against a black background, or strong positive positions appear white instead of black — signal is so saturated that it appears inverted.

💡 3 causes ✓ 4 fixes
Western Blot moderate

Local blank patches / air bubble imprints

Certain regions of the membrane show no signal at all, forming round or irregular blank zones; often due to transfer failure in those areas while surrounding bands look normal.

💡 4 causes ✓ 4 fixes
Western Blot moderate

Uneven transfer / splotchy band pattern

Within a single band the intensity is uneven (light/dark patches); bands across different lanes have inconsistent shapes, with a splotchy appearance.

💡 4 causes ✓ 4 fixes
Western Blot severe

Band smearing / streaking

Bands have blurred edges, show vertical smearing or the entire lane is hazy; background is fogged, making band intensity comparisons unreliable.

💡 4 causes ✓ 4 fixes
Western Blot critical

No bands at all (blank membrane)

Membrane is completely blank — neither target protein nor housekeeping control shows any signal after ECL exposure.

💡 5 causes ✓ 5 fixes
Western Blot severe

Multiple / non-specific bands

Bands appear at molecular weights that do not match the expected target; multiple bands present where only one is expected.

💡 5 causes ✓ 5 fixes
Western Blot moderate

Weak bands (faint signal)

Bands are visible but barely detectable; long exposure times are needed, and the internal control also appears weak.

💡 5 causes ✓ 5 fixes
Western Blot minor

Smiling bands (curved bands)

Bands curve upward at the edges of the gel, appearing like a smile — the middle of the lane runs faster than the sides.

💡 4 causes ✓ 4 fixes