Failure Case Library

Real lab failures, root causes, and fixes — curated and bilingually annotated by our team.

All Techniques (6) Nucleic Acid Quantification (9) Lipid Transfection (8) End-point PCR Primers (9) Cell Culture (Contamination) (7) PCR (Sigma Guide) (12) Flow Cytometry (Controls) (8) PCR / qPCR Plastics (9) PCR (Invitrogen Guide) (8) Cell Culture (Precipitates) (6) Cell Culture (Cell Death) (8) ELISA (Sigma Guide) (6) PCR / RT-PCR Amplification Problems (5) Flow Cytometry (Paraformaldehyde Fixation) (14) Flow Cytometry (Sample Considerations) (14) ELISA (R&D Guide) (10) Western Blot Immunodetection (19) Flow Cytometry (CST Guide) (8) Immunohistochemistry (CST Guide) (14) Immunoprecipitation (CST Guide) (14) ChIP (CST Guide) (8) ELISA Development (9) Western Blot (Sigma Protocol) (8) IP-Western Blot (6) Western Blot (CST Guide) (8) Flow Cytometry (Fixation Buffers) (7) Flow Cytometry (Isotype Controls) (7) Flow Cytometry (Fixation & Permeabilization) (9) Flow Cytometry (Fc Blocking) (7) Flow Cytometry (Compensation) (7) Flow Cytometry (Autofluorescence) (7) Flow Cytometry (Troubleshooting) (8) Tissue Imaging (Autofluorescence) (9) ELISPOT (8) Immunoprecipitation (Protein Obstruction) (1) Immunoprecipitation (No Protein Detected) (5) Immunoprecipitation (High Background) (8) Immunoprecipitation (High Antibody Elution) (1) Immunohistochemistry (No Staining) (9) Immunohistochemistry (High Background) (9) ChIP (PCR Amplification Problems) (4) ChIP (Low Signal) (8) ChIP (Low Resolution with High Background) (6) ChIP (High Background) (1) Western Blot (Blue Background) (1) Western Blot (Unusual Gel Band Appearance) (3) Western Blot (Unexpected Multiple Bands) (7) Western Blot (Misshapen / Uneven Bands) (5) Western Blot (Bands at Wrong MW) (5) Western Blot (Detection Problems) (7) Western Blot (Weak / No Signal) (6) ELISA (Standard Curve Fit Problems) (6) ELISA (Inconsistent Results / High CV) (6) ELISA (High Background) (8) ELISA (Signal Problems) (11) ELISA (Competitive) (18) Cell-free DNA Extraction (8) Bacterial rRNA Depletion (4) RNA Depletion for RNA-seq (7) LAMP (Loop-mediated Isothermal Amplification) (7) HMW DNA Extraction (Monarch) (7) NGS Library Preparation (NEBNext Ultra II) (7) RNA Cleanup (4) DNA Cleanup & Plasmid Purification (7) PCR (Polymerase Chain Reaction) (26) Restriction Enzyme Digest (13) Western Blot (9) Immunohistochemistry (IHC) (6) Colony Formation Assay (10) Transwell Migration / Invasion Assay (5) qPCR (RT-qPCR) (5) Transfection (8) Plasmid Construction (1) Sanger Sequencing (2) Plasmid Mini-prep (1) Plasmid Construction (Double Digest) (1) Protein Extraction (4) Transfection (Co-transfection) (1) Transfection (siRNA Knockdown) (1) CCK-8 Cell Viability Assay (5) Wound Healing Assay (5)
Western Blot (Weak / No Signal) moderate

Weak or Absent Signal Due to Insufficient Exposure

Western blot film shows very faint bands or no visible bands after initial exposure. The membrane may contain protein and antibody binding has occurred, but the chemiluminescent or colorimetric signal is not captured adequately on film.

💡 4 causes ✓ 4 fixes
Western Blot (Weak / No Signal) moderate

Weak Signal from Inadequate Antibody Concentration

Western blot shows weak or barely detectable bands even with adequate exposure time. Positive controls may show reduced signal intensity compared to expected results, indicating suboptimal antibody binding.

💡 4 causes ✓ 4 fixes
Western Blot (Weak / No Signal) moderate

Inadequate Antibody Incubation Time

Western blot yields weak signal despite using appropriate antibody concentrations and sample amounts. The antibody-antigen binding has not reached equilibrium, resulting in suboptimal signal development.

💡 4 causes ✓ 4 fixes
Western Blot (Weak / No Signal) severe

HRP Activity Inhibition by Sodium Azide

Western blot shows no signal or extremely weak signal when using HRP-conjugated secondary antibodies. Chemiluminescent substrate fails to produce expected light emission even with adequate antibody binding and exposure time.

💡 4 causes ✓ 5 fixes
Western Blot (Weak / No Signal) severe

Alkaline Phosphatase Inhibition by Tween 20

Western blot using alkaline phosphatase (AP)-conjugated antibodies shows weak or no colorimetric signal development. The BCIP/NBT or other AP substrates fail to produce expected colored precipitate even with adequate incubation time.

💡 4 causes ✓ 5 fixes
Western Blot (Weak / No Signal) severe

Insufficient Protein Sample Loading

Western blot shows weak or no signal for target protein. Loading controls may also appear faint, indicating insufficient total protein loaded per lane. This is particularly problematic for low-abundance target proteins.

💡 4 causes ✓ 5 fixes