Home Immunology ELISpot tutorial: step-by-step full assay protocol
Steps
  1. 1 Prepare materials and activate PVDF membrane 00:01
  2. 2 Prepare and coat capture antibody 03:18
  3. 3 Wash plate and block with culture medium 05:06
  4. 4 Add cells and stimuli, then incubate 06:34
  5. 5 Apply detection antibody and streptavidin-ALP 09:25
  6. 6 Develop color with substrate and stop reaction 14:46
  7. 7 Count spots using automated reader 17:10
Immunology Mabtech

ELISpot tutorial: step-by-step full assay protocol

Protocol
Difficulty
intermediate

Steps

1
Prepare materials and activate PVDF membrane

Gather all necessary materials including MSIP plates, reagent troughs, ethanol, water, and multichannel pipettes. Activate the PVDF membrane in the ELISpot plate by adding 20 μl of 35% ethanol per well for maximum 1 minute, observing the color change from bright white to grey. Wash the plate 5 times with sterile water using a dispenser pipette.

▶ 00:01
2
Prepare and coat capture antibody

Prepare diluted capture antibody from Mabtech in a reagent trough, calculating 100 μl per well plus excess. Add 100 μl of diluted capture antibody to each well using a multichannel pipette, then wrap the plate in aluminum foil and refrigerate overnight.

▶ 03:18
3
Wash plate and block with culture medium

Remove aluminum foil and discard excess capture antibody into waste. Wash the plate 5 times with 200 μl PBS per well using a dispenser pipette. Add 200 μl of cell culture medium to each well and incubate at room temperature for at least 30 minutes to block non-specific binding.

▶ 05:06
4
Add cells and stimuli, then incubate

Add 25 μl of cell culture medium to each well, followed by 25 μl of prepared stimuli (peptide pools diluted in culture medium), then 50 μl of cell suspension at approximately 250,000 cells per well. Wrap the plate in aluminum foil and incubate in a 37°C humidified CO₂ incubator for the appropriate duration based on cell type and antigen.

▶ 06:34
5
Apply detection antibody and streptavidin-ALP

Discard cells and wash the plate 5 times with 200 μl PBS per well. Filter biotinylated detection antibody diluted to 1 μg/ml in PBS with 0.5% FCS through a 0.2 μm filter, then add 100 μl per well and incubate at room temperature for 2 hours. Wash 5 times with PBS, then add 100 μl of streptavidin-ALP diluted 1:1000 per well and incubate for 1 hour at room temperature.

▶ 09:25
6
Develop color with substrate and stop reaction

Wash the plate 5 times with 200 μl PBS per well. Filter BCIP/NBT-plus substrate through a 0.45 μm filter into a reagent trough, then add 100 μl per well. Monitor color development under a microscope for 5-30 minutes until clear spots appear, then stop the reaction by thoroughly rinsing with tap water and allow the plate to dry completely.

▶ 14:46
7
Count spots using automated reader

Once the plate is completely dry, insert it into an automated ELISpot reader such as IRIS or ASTOR to count the spot-forming cells. The reader will quantify the immune response based on the number and intensity of developed spots.

▶ 17:10

🚨 Failure Case Library (8) + Submit your own case

critical
No Spots or Very Weak Signal
Few or no spots are visible after development, or spots are extremely faint and difficult to detect even though cytokine-secreting cells should be present.
💡 5 · ✓ 5
severe
Merged or Indistinguishable Spots
Spots merge together and become indistinguishable, making it impossible to count individual cytokine-secreting cells. This results in large, confluent areas instead of discrete spots.
💡 4 · ✓ 4
severe
False Positive Spots and High Background
Non-specific spots appear in negative control wells or throughout the plate. Background signal is elevated, making spot discrimination difficult.
💡 6 · ✓ 6
severe
Poorly Defined or Fuzzy Spots
Spots lack sharp borders and appear fuzzy or poorly defined, making automated or manual counting difficult. The reader has trouble distinguishing individual spots.
💡 5 · ✓ 5
severe
Physical Membrane Damage and Artifacts
Membrane shows physical damage, scratches, or irregular patterns. Spots may appear distorted or artifacts present as non-specific signals.
💡 4 · ✓ 4
moderate
Over-Developed Plate with Excessive Background Color
The entire membrane has excessive background color development, reducing contrast between spots and background. Spots may be obscured by high background signal.
💡 4 · ✓ 4
moderate
Inconsistent Results Between Wells (Edge Effects)
Results vary significantly between wells that should be replicates. Edge wells often show different spot counts or characteristics compared to central wells, creating systematic position-dependent effects.
💡 4 · ✓ 4
moderate
White Spots in Center of Normal Spots (Donut Pattern)
Spots develop with white or lighter centers surrounded by darker rings, creating a donut-like appearance. This is more common with enzymatic detection methods.
💡 3 · ✓ 3
💬 Comments coming soon